AE definitely means that it's a 2014 not a 2006. In 06 they were stamping the serial number and they started with W ( have a 2006. On mine, the W is above the number. I think they had to get a new stamp as the old one was wearing out). They didn't start hand writing numbers until later. It's hard to say what the '06 designates, and don't know they'll have any special info regarding it's specs. Sometimes Ren or Jim would remember special orders, but if you built a few thousand guitars over 25 years, you wouldn't remember every one. I don't know that they kept a computer database, although by 2015 they may have well converted.
If I remember the first two numbers are the days working backwards from Dec 31, and the last two is the number of the guitar issued that day. That would make it the second guitar of Monday Oct 27th 2014.
The Seth Lovers could easily been owner changed, or factory installed. It's also possible that the paper label either wasn't installed or came loose. Still, they are of a close date to the guitar serial.
I don't think it would be worth the time to pull the pots just to look at date codes.